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Mouse Genome Server
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About MGSC   
Mouse Genome Sequencing Consortium The Mouse Genome Sequencing Consortium is a joint project between The Whitehead Institute/MIT Center for Genome Research, The Washington University Genome Sequencing Center, The Wellcome Trust Sanger Institute and EMBL - EBI to provide the Mouse genome sequence to the world. We work closely with other Mouse groups to provide an integrated resource [details].
Mouse Genome Assembly NCBI m33
This site provides a full Ensembl gene build for the NCBI m33 mouse assembly (freeze May 27, 2004, strain C57BL/6J). After extensive QC from both the Sanger Institute and NCBI, most artefactual assembly issues introduced in build m32 have been removed. The whole genome N50 is 22.3 Mb. (Build m32 was 17.7 Mb).

New software systems have improved the gene set. More than 85% of genes from build m32 retain the same Ensembl gene ids in this release. New gene identifiers were assigned where a many-to-one or many-to-many mapping of old genes to new gene structures was detected.

Patches to this build will be provided regularly as more detailed analysis is performed.

 o  Mouse sequencing project credits
 o  Additional mouse resources
 o  Top 40 InterPro domains
 o  The mouse physical map has been published in Nature
 o  MGSC newsletter pdfs

Current Release 31.33g
Last Update:  22-03-2005
Ensembl gene predictions:  28069
(incl. 3608 pseudogenes)   
Genscan gene predictions:  91495
Ensembl gene exons:  229676
Ensembl gene transcripts:  35276
Contigs:  132226
Clones:  9951
SuperContigs:  41017
Chromosomes:  22
Base Pairs:  2932368526
Golden Path Length:  2615219335
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