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Dog Genome Browser
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About Dog Ensembl
Tasha the boxer. Rossages! This site provides the first gene annotation set based on the initial release of the dog genome. [credits]

The assembly is constructed from a WGS read coverage of 7.6x (Q20 bases, assuming a genome of 2.4 Gb). It has an N50 contig length of 123 kb, N50 supercontig length of 41.6 Mb.

The gene build was run via a reasonably standard Ensembl mammalian pipeline, modifed to make optimal choices of source proteins for each gene. This initial analysis gives 20,439 genes with 32,546 transcripts, but lacks a number (around 700) of orthologs to human which seem placeable on the dog genome. We are investigating these in more detail and may release a patched dataset in 2005.

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Current Release 31.1c
Last Update:  22-03-2005
Ensembl gene predictions:  20439
(incl. 2238 pseudogenes)   
Genscan gene predictions:  77477
Ensembl gene exons:  224055
Ensembl gene transcripts:  32546
NtContigs:  17622
Contigs:  59927
Clones:  59927
SuperContigs:  17620
Chromosomes:  39 (plus 1 other fragments)
Base Pairs:  2385199138
Golden Path Length:  2359708512
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