Honeybee Genome Browser
	Ensembl Entry Points Search for Anything Domain EST Family Gene Marker Peptide Protein Sequence with   Show Fragment From  To  Retrieve a sequence  Advanced data retrieval tool
	About Honeybee Ensembl This site presents an annotation of release 2.0 of the honeybee genome assembly [more]. The honeybee genome sequence was determined by whole genome shotgun at the Human Genome Sequencing Center at Baylor College of Medicine. The data comprises: Repeats which have been identified with - RepeatMasker using the Drosophila melanogaster repeat library - RepeatMasker, with repeat consensi provided using an ab-initio analysis kindly performed by Damian Keefe of the EBI's ENCODE project using the RECON repeat-finding package - Repeat sequences identified by the ab-initio analysis which were not found by the RepeatMasker's drosophila library Low complexity sequence identified with Dust. Ab initio gene predictions - which have been generated with Genscan and FGenesH Blast features - showing similarities to entries in Uniprot from a sensitive search against the genome. Gene predictions - These are grouped by confidence, and generated from a combination of evidence sources: honeybee-specific peptides, homology to Uniprot, and honeybee-specific ESTs. Lower confidence predictions are generated with homology to Uniprot only. Current Release 31.2 Assembly: Baylor release 2.0 of honeybee genome. Last Update:  09-05-2005 Ensembl gene predictions:  13448 Genscan gene predictions:  20998 Ensembl gene exons:  136802 Ensembl gene transcripts:  27755 Scaffolds:  7655 Groups:  17 Contigs:  16028 Base Pairs:  228567597 Golden Path Length:  224720104	Example Data Points For this release we have chosen to display the data using Groups (or contigs).Use the BLAST and SSAHA buttons in the Entry Points section above to locate data, or enter the Group (e.g. Group6) and basepairs to jump to, or scaffold (e.g. Group6.9) and basepairs to jump to. A few example data points :    Assembly fragment : Group1:4800000 - 5200000    Contig : Contig 3935    Gene : ENSAPMG00000003200    Gene : ENSAPMG00000005403 A number of other sites are also displaying honeybee data or predictions. Notable sites are:    NCBI Entrez Genome Viewer    Texas A&M Honeybee Genome Database    EMBL-heidelberg gene predictions    UCSC Honeybee Genome Browser Gateway Documentation & Help About Ensembl For context-sensitive help on any web page click Questions or suggestions? Try Documentation (includes tutorial on direct data access & instructions for installing Ensembl on your own site) Ensembl Links and Site Map Other Species