 |
 |
v21.2b.1 Update |
 |
 |
 |
 |
 |
Ensembl mosquito v21.2b.1 is a minor update, made to accompany the chimp release, and updated genebuilds for human and Fugu.
The new/updated mosquito data in release 21 are:
Compara database
- New BLAT alignments
- Homologues extended to include mammals vs Diptera/Nematoda
|
 |
 |
 |
 |
 |
Schema changes in v21 |
 |
 |
 |
 |
 |
Compara database
- New sequence table, and the addition of a sequence_id in member (and
removal of member.sequence).
- New version column for peptide/gene versions in the member table.
- New genebuild column in the genome_db table, to allow for different
gene builds off the same assembly.
|
 |
 |
 |
 |
 |
 |
New features in v21 |
 |
 |
 |
 |
 |
ContigView
Haplotype and Pseudo Autosomal Regions (PAR) are now displayed on
ContigView. The chromosome-level display indicates the long-range
position of these assembly features, while the detailed view colours
these regions differently (red for Haps, blue for PARs). Clicking on the
HAP/PAR track allows you to switch between the different versions of the
assembly.
FirstEF track added. This track shows features produced by FirstEF: a
first-exon and promoter prediction program for human DNA (http://rulai.cshl.org/tools/FirstEF)
|
 |
 |
GeneView
Displays alternative location for genes (e.g. in a PAR/HAP)
New GeneDAS sources
- HUGO_text : an experimental source of Medline text-mining for HUGO
symbols
- GAD: the Genetic Association Database tracks papers reporting association
studies to around 2,000 disease genes.
|
 |
 |