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New data in v10.2.1 |
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Mosquito Assembly 2
This release contains the second mosquito assembly. The dataset
contains a new gene build with spliced variants, EST mapping,
orthologue detection with drosophila, and integration of the submitted
Anopheles gene names. The scaffold ordering is also new (thanks to
Frank's Collins group in Notre Dame), and haplotypes have been removed
from the assembly.
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SNPs
The SNP database has been updated to dbSNP 109 data.
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Changes/new features in v10.2.1 |
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Basepair level display
ContigView now displays an extra level of information about a selected region. As well as showing chromosome, overview and detailed levels of data, it now also has a basepair view which shows individual bases and codon translations. All of these levels of detail can be independantly toggled on/off by clicking on the "-" or "+" to the left of each label. [more...]
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Restriction enzyme track
Enzyme restriction sites can be displayed on ContigView. These are shown by default on the basepair-level view, and can be switched on in the detailed view via the "Decorations" dropdown menu. [more...]
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GeneView/TransView/ProtView redesign
The pages showing details of genes, transcripts, and proteins have been redesigned. The page content should now be shorter, more logical, and easier to navigate.
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New ExonView page
ExonView displays the details of the exons of a particular transcript. The data shown includes the supporting evidence used to build the transcript, and the exon sequence. ExonView also provides a convenient way to retrieve user-definable amounts of upstream, downstream and intron sequence.
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New DotterView page
DotterView displays a graphical dotplot comparison of two sequences, using the application Dotter. This page is currently linked to from homology tracks in ContigView (e.g. "Human matches" on Mouse and vice versa). [more...]
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MartView updates
See the EnsMart homepage for details of Mart updates.
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